The plane landed in Frankfurt at around 5.30pm, met by a waiting medical staff
Customers of Bank of the Philippine Islands (BPI) woke up Wednesday unable to access their accounts online with many shocked to see unauthorised withdrawals and deposits.
BPI said in a statement the problem was caused by an "internal data processing error" that had been identified.
Efforts to fix the problem were "progressing well" and the glitch was expected to be resolved within the day, the bank added in a new statement.
Online transactions remained suspended but bank branches were open, although transactions took much longer.
"We wish to assure all clients that the integrity of their transactions and account balances will be maintained," it said.
Nestor Espenilla, the incoming governor of the Bangko Sentral ng Pilipinas, the country's central bank, said they had accepted "for now" BPI's explanation that no hacking was involved, but would still conduct its own probe.
"We have no reason to believe otherwise at this point of time, but as I said this is standard operating procedure, we always verify every incident that we are aware of," Espenilla said in a radio interview.
"For now I think it's important that BPI resolves it as quickly as possible. We take their assurance that this is not a hack and no money will be lost."
The bank said the error had led to some transactions between April 27 and May 2 to be "double posted" starting on Tuesday.
Customers vented their frustrations through social media.
"I had 3 unauthorize atm withdrawals! What the heck! I don't have any money left on my Personal acct!!" a customer named Belle tweeted.
"They didn't only take my savings, I am now in debt," read a Tagalog post by iamEm-em on a BPI Twitter page.
A user called wild flower wrote: "I lost my money... I only have 15 pesos (30 US cents) left on my pocket. How can I go home? Fix it please."
The world has been on edge about hacking incidents following the world's biggest ransomware attack last month that struck hundreds of thousands of computers worldwide.
The plane landed in Frankfurt at around 5.30pm, met by a waiting medical staff
The Bedfordshire-based Hatters remain in the Premier League's relegation zone after Friday's 1-1 draw at Kenilworth Road
INS Sumedha, deployed for anti-piracy operations in the Arabian Sea, intercepted fishing vessel Al Rahmani in early hours of April 30
The Dutch ace beat Ferrari’s Charles Leclerc to take pole position for the sprint race
Extreme heat has blasted Asia from India to the Philippines in recent weeks, triggering heatstroke deaths, school closures and desperate prayers for cooling rain
Special attention is directed towards controlling mosquitoes in stagnant water, ministry says
That's why we have the CAA (Citizenship Amendment Act), which is to open up doors for people who are in trouble, Subrahmanyam Jaishankar said
King Abdullah II last visited the White House in February when he called for an immediate ceasefire